Esophageal Adenocarcinoma Organoid Genomics

Single cell RNA-seq (scRNA-seq) of esophageal adenocarcinoma organoids to benchmark variant calling from 10X Genomics scRNA-seq data. Five EAC organoids were subjected to scRNA-seq and two included matched exome data.

Type: Other
Archiver: European Genome-Phenome Archive (EGA)

1 Dataset 1 Publication

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID	Description	Technology	Samples
EGAD00001007525	This is 10X single cell RNA-seq data of esophageal adenocarcinoma organoids.	Illumina HiSeq 4000	5

Publications	Citations
scSNV: accurate dscRNA-seq SNV co-expression analysis using duplicate tag collapsing. Wilson GW, Derouet M, Darling GE, Yeung JC. Genome Biol 22: 2021 144	6