The evolutionary landscape of colorectal tumorigenesis
The genetic events that cause colorectal adenomas to progress to carcinomas remain largely undetermined. Using multi-region genome/exome sequencing of 24 benign and malignant colorectal tumours, we probe the evolutionary fitness landscape occupied by these neoplasms. Unlike carcinomas, advanced adenomas frequently harbour sub-clonal driver mutations, hence lack selective sweeps, and have relatively high genetic heterogeneity. Carcinomas are distinguished from adenomas not by nucleotide-level mutations (drivers or burden), but by widespread aneusomies that are usually clonal and often accrue in a “punctuated” fashion. Adenomas evolve across an undulating fitness landscape, whereas carcinomas occupy a sharper fitness peak, probably owing to stabilising selection.
- Type: Other
- Archiver: European Genome-Phenome Archive (EGA)
Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data
| Dataset ID | Description | Technology | Samples | 
|---|---|---|---|
| EGAD00001004966 | Illumina HiSeq 2500 unspecified | 139 | 
| Publications | Citations | 
|---|---|
| The evolutionary landscape of colorectal tumorigenesis. Nat Ecol Evol 2: 2018 1661-1672 | 67 | 
| NeoPredPipe: high-throughput neoantigen prediction and recognition potential pipeline. BMC Bioinformatics 20: 2019 264 | 59 | 
| Subclonal reconstruction of tumors by using machine learning and population genetics. Nat Genet 52: 2020 898-907 | 46 | 
| Evolutionary dynamics of neoantigens in growing tumors. Nat Genet 52: 2020 1057-1066 | 44 | 
| Computational validation of clonal and subclonal copy number alterations from bulk tumor sequencing using CNAqc. Genome Biol 25: 2024 38 | 2 | 
| Evolving copy number gains promote tumor expansion and bolster mutational diversification. Nat Commun 15: 2024 2025 | 1 | 
