EGAD00001001048 
        	              
                       
                    		 Samples from Edwards et al 2015 - doi:10.1186/s12864-015-1685-z 
        	              
                       
        		             
                           
                             Illumina HiSeq 2000 
                           
                         
                        
                       - 
                      
                   
                     
                       
        		               EGAD00001001071 
        	              
                       
                    		 Samples from the "100" project that are in the ICGC PanCancer project. 
        	              
                       
        		             
                           
                             Illumina HiSeq 2000 
                           
                         
                        
                       10 
                      
                   
                     
                       
        		               EGAD00001001394 
        	              
                       
                    		 Samples from Ross Innes et. al 2015 - doi:10.1038/ng.3357 
        	              
                       
        		             
                           
                             Illumina HiSeq 2000 
                           
                         
                        
                       - 
                      
                   
                     
                       
        		               EGAD00001001457 
        	              
                       
                    		 All samples from the "100" project 
        	              
                       
        		             
                           
                             Illumina HiSeq 2000 
                           
                         
                        
                       24 
                      
                   
                     
                       
        		               EGAD00001001960 
        	              
                       
                    		 upcoming publication 
        	              
                       
        		             
                           
                             Illumina HiSeq 2000 
                           
                         
                        
                       - 
                      
                   
                     
                       
        		               EGAD00001002218 
        	              
                       
                    		 Sequencing data for ICGC Oesophageal Adenocarcinoma tissue samples - 129_cohort
EAC whole genomic sequencing data - Publication Secrier & Li et al., 2016, Nature Genetics 
        	              
                       
        		             
                           
                             Illumina HiSeq 2000 
                           
                         
                        
                       10 
                      
                   
                     
                       
        		               EGAD00001002241 
        	              
                       
                    		 Sequencing data for ICGC Oesophageal Adenocarcinoma tissue samples - chemo_cohort 
        	              
                       
        		             
                           
                             Illumina HiSeq 2000 
                           
                         
                        
                       6 
                      
                   
                     
                       
        		               EGAD00001002689 
        	              
                       
                    		 ICGC Oesophageal Adenocarcinoma tissue samples 
        	              
                       
        		             
                           
                             Illumina HiSeq 2000 
                           
                         
                        
                       - 
                      
                   
                     
                       
        		               EGAD00001003292 
        	              
                       
                    		 WGS sequencing for cases from the ICGC ESAD-UK project
Tumours 50x Normals 30x 
HiSeq X
BAM files
These samples are all available in ICGC release 24 
        	              
                       
        		             
                           
                             Illumina HiSeq 2000 
                           
                         
                        
                       34 
                      
                   
                     
                       
        		               EGAD00001003580 
        	              
                       
                    		 WGS sequencing for 303 cases (620 samples) from the ICGC ESAD-UK project
Tumours 50x Normals 30x 
HiSeq X
BAM files
These samples are all available in ICGC release 26 
        	              
                       
        		             
                           
                             Illumina HiSeq 2000 
                           
                         
                        
                       38 
                      
                   
                     
                       
        		               EGAD00001004137 
        	              
                       
                    		 WGS sequencing for 409 cases (832 samples) from the ICGC ESAD-UK project
Tumours 50x Normals 30x 
HiSeq X
BAM files
These samples are all available in ICGC release 28 
        	              
                       
        		             
                           
                             Illumina HiSeq 2000 
                           
                         
                        
                       - 
                      
                   
                     
                       
        		               EGAD00001004417 
        	              
                       
                    		 Data supporting: "The landscape of selection in 551 Esophageal Adenocarcinomas defines genomic biomarkers for the clinic." Frankell et al.
WGS (BAM files)
379 matched tumour-normal pairs 
        	              
                       
        		             
                           
                             Illumina HiSeq 2000 
                           
                         
                        
                       - 
                      
                   
                     
                       
        		               EGAD00001004775 
        	              
                       
                    		 Data supporting: "Patient-specific detection of cancer genes reveals recurrently perturbed processes in esophageal adenocarcinoma." Mourikis et al.
WGS (BAM files)
521 samples 
        	              
                       
        		             
                           
                             Illumina HiSeq 2000 
                           
                         
                        
                       - 
                      
                   
                     
                       
        		               EGAD00001005434 
        	              
                       
                    		 Data supporting: "Genomic evidence supports a clonal diaspora model for metastases of esophageal adenocarcinoma." Noorani et al.
WGS (BAM files)
134 samples for 18 cases
Includes primary, lymph-node, distant metastatic, Barrett's and normal samples. 
        	              
                       
        		             
                           
                             Illumina HiSeq 2000 
                           
                         
                        
                       - 
                      
                   
                     
                       
        		               EGAD00001007493 
        	              
                       
                    		 Data supporting: "Genomic analysis of response to neoadjuvant chemotherapy in esophageal adenocarcinoma" Izadi et al.
WGS for tumour and normal samples.
RNAseq for tumour samples. 
        	              
                       
        		             
                           
                             HiSeq X Five 
                           
                             Illumina HiSeq 2000 
                           
                             Illumina NovaSeq 6000 
                           
                         
                        
                       8 
                      
                   
                     
                       
        		               EGAD00001007496 
        	              
                       
                    		 Data supporting: "Widespread reorganisation of the regulatory chromatin landscape facilitates resistance to inhibition of oncogenic ERBB2 signalling" Ogden et al.
WGS for tumour and normal samples.
RNAseq for tumour samples. 
        	              
                       
        		             
                           
                             HiSeq X Five 
                           
                             Illumina HiSeq 2000 
                           
                         
                        
                       - 
                      
                   
                     
                       
        		               EGAD00001007785 
        	              
                       
                    		 Data from 496 OCCAMS (Oesophageal Cancer Clinical And Molecular Stratification) cases.
WGS
BAM files
496x oesophageal adenocarcinoma samples
496x normal samples 
        	              
                       
        		             
                           
                             HiSeq X Five 
                           
                             Illumina HiSeq 2000 
                           
                             Illumina NovaSeq 6000 
                           
                         
                        
                       - 
                      
                   
                     
                       
        		               EGAD00001007808 
        	              
                       
                    		 Data supporting "Interplay of processes shapes structural variations undergoing selection in oesophageal adenocarcinoma" Ng, Contino et al.
WGS (BAM files)
383 oesophageal adenocarcinoma samples
383 normal samples 
        	              
                       
        		             
                           
                             Illumina HiSeq 2000 
                           
                         
                        
                       - 
                      
                   
                     
                       
        		               EGAD00001011095 
        	              
                       
                    		 Data supporting: "The transcriptional landscape of endogenous retroelements delineates esophageal adenocarcinoma subtypes" WGS for 452 samples 
        	              
                       
        		             
                           
                             HiSeq X Five 
                           
                             Illumina HiSeq 2000 
                           
                         
                        
                       - 
                      
                   
                     
                       
        		               EGAD00001011187 
        	              
                       
                    		 Data supporting: "Understanding the malignant potential of gastric metaplasia of the oesophagus and its relevance to Barrett’s Oesophagus surveillance: individual-level data analysis" Black et al (WGS OACs/BOs/normals) 
        	              
                       
        		             
                           
                             HiSeq X Five 
                           
                             Illumina HiSeq 2000 
                           
                             Illumina NovaSeq 6000 
                           
                             unspecified 
                           
                         
                        
                       63 
                      
                   
                     
                       
        		               EGAD00001011191 
        	              
                       
                    		 Data supporting: "TBC" Ganguli et al (WGS for 1298 samples) 
        	              
                       
        		             
                           
                             HiSeq X Five 
                           
                             Illumina HiSeq 2000 
                           
                             Illumina NovaSeq 6000 
                           
                             unspecified 
                           
                         
                        
                       42 
                      
                   
                     
                       
        		               EGAD00001011196 
        	              
                       
                    		 Data supporting: "Mutational signature dynamics shaping the evolution of oesophageal adenocarcinoma" Abbas et al (WGS for 1397 samples) 
        	              
                       
        		             
                           
                             HiSeq X Five 
                           
                             Illumina HiSeq 2000 
                           
                             Illumina NovaSeq 6000 
                           
                             unspecified 
                           
                         
                        
                       6