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Southern African Human Genome Programme dataset

The SAHGP characterises the genomes of 24 individuals (8 Coloured and 16 black southeastern Bantu-speakers) using deep whole genome sequencing (WGS).

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SAHGP Policy

Ethics approval for this pilot study was obtained from the Human Research Ethics Committee (Medical) of the University of the Witwatersrand, Johannesburg (Ethics approval code: M121182). The participants were fully informed of the nature of the project. Informed consent was obtained from each participant for the sharing of DNA samples and data. The genome data was obtained using a grant from the South African National Department of Science and Technology (DST).

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001002639 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00001768069 bam 88.4 GB
EGAF00001768070 bai 8.8 MB
EGAF00001768071 bam 91.1 GB
EGAF00001768072 bai 8.8 MB
EGAF00001768073 bam 94.0 GB
EGAF00001768074 bai 8.8 MB
EGAF00001768075 bam 91.7 GB
EGAF00001768076 bai 8.8 MB
EGAF00001768077 bam 87.8 GB
EGAF00001768078 bai 8.8 MB
EGAF00001768079 bam 89.7 GB
EGAF00001768080 bai 8.8 MB
EGAF00001768081 bam 87.4 GB
EGAF00001768082 bai 8.8 MB
EGAF00001768083 bam 75.0 GB
EGAF00001768084 bai 8.8 MB
EGAF00001768085 bam 83.5 GB
EGAF00001768086 bai 8.8 MB
EGAF00001768087 bam 98.4 GB
EGAF00001768088 bai 8.8 MB
EGAF00001768089 bam 92.7 GB
EGAF00001768090 bai 8.8 MB
EGAF00001768091 bam 86.5 GB
EGAF00001768092 bai 8.8 MB
EGAF00001768093 bam 75.7 GB
EGAF00001768094 bai 8.8 MB
EGAF00001768095 bam 59.1 GB
EGAF00001768096 bai 8.7 MB
EGAF00001768097 bam 84.1 GB
EGAF00001768098 bai 8.8 MB
EGAF00001768099 bam 96.8 GB
EGAF00001768100 bai 8.8 MB
EGAF00001768101 bam 84.3 GB
EGAF00001768102 bai 8.8 MB
EGAF00001768103 bam 82.8 GB
EGAF00001768104 bai 8.8 MB
EGAF00001768105 bam 83.4 GB
EGAF00001768106 bai 8.8 MB
EGAF00001768107 bam 83.8 GB
EGAF00001768108 bai 8.8 MB
EGAF00001768109 bam 82.8 GB
EGAF00001768110 bai 8.8 MB
EGAF00001768111 bam 89.0 GB
EGAF00001768112 bai 8.8 MB
EGAF00001768113 bam 89.0 GB
EGAF00001768114 bai 8.8 MB
EGAF00001768115 bam 87.3 GB
EGAF00001768116 bai 8.8 MB
EGAF00001777253 vcf 156.5 MB
EGAF00001777254 vcf 9.8 kB
EGAF00001777255 vcf 334.0 MB
EGAF00001777256 vcf 2.0 GB
EGAF00001777257 vcf 120.6 MB
EGAF00001777258 vcf 23.8 GB
EGAF00001777259 vcf 156.5 MB
EGAF00001777260 vcf 8.6 kB
EGAF00001777261 vcf 323.0 MB
EGAF00001777262 vcf 2.0 GB
EGAF00001777263 vcf 316.8 MB
EGAF00001777264 vcf 2.0 GB
EGAF00001777265 vcf 111.5 MB
EGAF00001777266 vcf 20.2 GB
EGAF00001777267 vcf 156.5 MB
EGAF00001777268 vcf 9.6 kB
EGAF00001777269 vcf 317.4 MB
EGAF00001777270 vcf 2.0 GB
EGAF00001777271 vcf 113.4 MB
EGAF00001777272 vcf 320.2 MB
EGAF00001777273 vcf 2.0 GB
EGAF00001777274 vcf 118.5 MB
EGAF00001777275 vcf 21.7 GB
EGAF00001777276 vcf 156.5 MB
EGAF00001777277 vcf 7.6 kB
EGAF00001777278 vcf 309.0 MB
EGAF00001777279 vcf 2.0 GB
EGAF00001777280 vcf 115.9 MB
EGAF00001777281 vcf 20.4 GB
EGAF00001777282 vcf 156.5 MB
EGAF00001777283 vcf 6.4 kB
EGAF00001777284 vcf 290.1 MB
EGAF00001777285 vcf 1.8 GB
EGAF00001777286 vcf 116.2 MB
EGAF00001777287 vcf 18.3 GB
EGAF00001777288 vcf 156.5 MB
EGAF00001777289 vcf 7.9 kB
EGAF00001777290 vcf 298.5 MB
EGAF00001777291 vcf 1.9 GB
EGAF00001777292 vcf 119.8 MB
EGAF00001777293 vcf 20.7 GB
EGAF00001777294 vcf 156.5 MB
EGAF00001777295 vcf 9.1 kB
EGAF00001777296 vcf 285.8 MB
EGAF00001777297 vcf 1.8 GB
EGAF00001777298 vcf 110.8 MB
EGAF00001777299 vcf 22.9 GB
EGAF00001777300 vcf 156.5 MB
EGAF00001777301 vcf 7.3 kB
EGAF00001777302 vcf 282.6 MB
EGAF00001777303 vcf 1.8 GB
EGAF00001777304 vcf 124.2 MB
EGAF00001777305 vcf 22.0 GB
EGAF00001777306 vcf 156.5 MB
EGAF00001777307 vcf 6.6 kB
EGAF00001777308 vcf 299.9 MB
EGAF00001777309 vcf 1.8 GB
EGAF00001777310 vcf 119.2 MB
EGAF00001777311 vcf 15.9 GB
EGAF00001777312 vcf 156.5 MB
EGAF00001777313 vcf 6.6 kB
EGAF00001777314 vcf 306.1 MB
EGAF00001777315 vcf 1.9 GB
EGAF00001777316 vcf 125.6 MB
EGAF00001777317 vcf 17.0 GB
EGAF00001777318 vcf 156.5 MB
EGAF00001777319 vcf 6.6 kB
EGAF00001777320 vcf 310.7 MB
EGAF00001777321 vcf 1.9 GB
EGAF00001777322 vcf 114.1 MB
EGAF00001777323 vcf 18.0 GB
EGAF00001777324 vcf 156.5 MB
EGAF00001777325 vcf 10.1 kB
EGAF00001777326 vcf 316.7 MB
EGAF00001777327 vcf 2.0 GB
EGAF00001777328 vcf 109.5 MB
EGAF00001777329 vcf 19.4 GB
EGAF00001777330 vcf 119.4 MB
EGAF00001777331 vcf 16.2 GB
EGAF00001777332 vcf 156.5 MB
EGAF00001777333 vcf 6.3 kB
EGAF00001777334 vcf 294.7 MB
EGAF00001777335 vcf 1.9 GB
EGAF00001777336 vcf 108.4 MB
EGAF00001777337 vcf 15.3 GB
EGAF00001777338 vcf 156.5 MB
EGAF00001777339 vcf 8.8 kB
EGAF00001777340 vcf 320.7 MB
EGAF00001777341 vcf 2.0 GB
EGAF00001777342 vcf 108.8 MB
EGAF00001777343 vcf 16.7 GB
EGAF00001777344 vcf 156.5 MB
EGAF00001777345 vcf 19.8 GB
EGAF00001777346 vcf 156.5 MB
EGAF00001777347 vcf 9.0 kB
EGAF00001777348 vcf 320.6 MB
EGAF00001777349 vcf 2.0 GB
EGAF00001777350 vcf 110.4 MB
EGAF00001777351 vcf 22.7 GB
EGAF00001777352 vcf 156.5 MB
EGAF00001777353 vcf 7.0 kB
EGAF00001777354 vcf 156.5 MB
EGAF00001777355 vcf 9.0 kB
EGAF00001777356 vcf 316.8 MB
EGAF00001777357 vcf 2.0 GB
EGAF00001777358 vcf 105.9 MB
EGAF00001777359 vcf 20.1 GB
EGAF00001777360 vcf 156.5 MB
EGAF00001777361 vcf 8.0 kB
EGAF00001777362 vcf 8.6 kB
EGAF00001777363 vcf 328.9 MB
EGAF00001777364 vcf 2.1 GB
EGAF00001777365 vcf 128.9 MB
EGAF00001777366 vcf 23.2 GB
EGAF00001777367 vcf 156.5 MB
EGAF00001777368 vcf 9.2 kB
EGAF00001777369 vcf 325.2 MB
EGAF00001777370 vcf 2.0 GB
EGAF00001777371 vcf 122.1 MB
EGAF00001777372 vcf 21.0 GB
EGAF00001777373 vcf 156.5 MB
EGAF00001777374 vcf 7.6 kB
EGAF00001777375 vcf 324.4 MB
EGAF00001777376 vcf 2.0 GB
EGAF00001777377 vcf 121.1 MB
EGAF00001777378 vcf 18.3 GB
EGAF00001777379 vcf 156.5 MB
EGAF00001777380 vcf 10.9 kB
EGAF00001777381 vcf 323.2 MB
EGAF00001777382 vcf 2.0 GB
EGAF00001777383 vcf 113.7 MB
EGAF00001777384 vcf 14.9 GB
EGAF00001777385 vcf 156.5 MB
EGAF00001777386 vcf 10.6 kB
EGAF00001777387 vcf 308.4 MB
EGAF00001777388 vcf 2.0 GB
EGAF00001777389 vcf 87.5 MB
EGAF00001777390 vcf 15.2 GB
EGAF00001777391 vcf 156.5 MB
EGAF00001777392 vcf 9.4 kB
EGAF00001777393 vcf 329.4 MB
EGAF00001777394 vcf 2.0 GB
EGAF00001777395 vcf 118.0 MB
EGAF00001777396 vcf 17.6 GB
192 Files (2.6 TB)